Mammalian Pre-Repeat Sequence Conservation

Import to Excel or similar to display mammalian pre-repeat amino acid alignment
0,0,0,0,23,24,25,26,27,28,29,30,30a,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50 0,0,0,0,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53 1,green_monkey_or_grivet,Cercopithecus_aethiops,U08291,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 2,barbary_macaque,Macaca_sylvanus,U75382,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 3,mangabey,Cercocebus_aterrimus,U75384,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 4,baboon,Cercopithecus_mona,U75386,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 5,neglected_monkey,Cercopithecus_neglectus,U75387,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 6,patas_monkey,Cercopithecus_patas,U75388,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 7,colubus,Colobus_guereza,U08297,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 9,crab-eating_macaque,Macaca_fascicularis,U08298,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 10,night_monkey,Aotus_trivirgatus,U08293,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,S,S,P,G,G,N,R,Y,P 11,mandrill,Mandrillus_sphinx,U08303,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 12,hamadryas_baboon,Papio_hamadryas,U08294,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 13,langur,Presbytis_francoisi,U08302,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 14,sooty_mangabey,Cercocebus_torquatus_atys,U75385,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 15,stump-tailed_macaque,Macaca_arctoides,U08311,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 16,gelada_baboon,Theropithecus_gelada,U75383,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 17,malayan_gibbon,Hylobates_lar,U08299,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 18,gorilla,Gorilla_gorilla,U08300,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 19,gorilla,Gorilla_gorilla,U15166,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 20,chimpanzee,Pan_troglodytes,U08296,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 21,human,Homo_sapiens,M13899,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 22,orangutan,Pongo_pygmaeus,U08305,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 24,black-handed_spider_monkey,Ateles_geoffroyi,U08309,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 25,black_spider_x_b-h_spider,Ateles_paniscus_x_Ateles_fusciceps,U15164,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 26,brown-capped_capuchin,Cebus_apella,U08295,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,L,Y,P 27,marmoset,Callithrix_jacchus,U08304,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 28,squirrel_monkey,Saimiri_sciureus,U08310,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 29,squirrel_monkey,Saimiri_sciureus,U15165,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 29,squirrel_monkey,Saimiri_sciureus,U15165,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 30,rabbit,Oryctolagus_cuniculus,U28334,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,S,S,P,G,G,N,R,Y,P 31,golden_syrian_hamster,Mesocricetus_auratus,U78769,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 32,chinese_hamster,Cricetulus_griseus,M33958,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 33,armenian_hamster,Cricetulus_migratorius,M33959,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 34,cotton_rat,Sigmodon_fulviventer,unpub.Sch08,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,N,P,G,G,N,R,Y,P 35,cotton_rat,Sigmodon_hispiedis,unpub.Sch09,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,N,P,G,G,N,R,Y,P 36,gerbil,Meriones_unguiculatus,unpub.Sch10,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 37,mouse,Mus_musculus,M18070,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 38,mouse,Mus_musculus,M13685,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 39,mouse,Mus_musculus,M18071,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 40,rat,Rattus_norvegicus,D50093,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 41,sheep,Ovis_aries,AJ000735,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 42,sheep,Ovis_aries,AJ000739,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 43,sheep,Ovis_aries,AJ000738,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 44,sheep,Ovis_aries,AJ000737,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 45,sheep,Ovis_aries,AJ000736,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 46,sheep,Ovis_aries,AJ000734,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 47,sheep,Ovis_aries,AJ000681,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 48,sheep,Ovis_aries,AJ000680,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 49,sheep,Ovis_aries,AJ000679,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 50,african_goat,Capris_hircus,S82626,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 53,goat,Capris_hircus,unpub.Sch11,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 54,cow,Bos_taurus,D10614,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 55,cow,Bos_taurus,S55629,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 58,cow,Bos_taurus,AB001468,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 60,greater_kudu,Tragelaphus_strepsiceros,X74759,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 62,red_deer,Cervus_elaphus,Y09761,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 63,mule_deer,Odocoileus_hemionus_hemionus,U25965,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 65,mule_deer,Odocoileus_hemionus_hemionus,AF009180,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 66,mule_deer,Odocoileus_hemionus_hemionus,AF009181,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 68,elk,Cervus_elaphus_nelsoni,AF016228,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 69,camel,Camelus_dromedarius,Y09760,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 70,pronghorn,Antilocapra_americana,F090852,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 71,addax_antelope,Addax_nasomaculatus,unpub.Sch12,-,-,-,-,-,-,-,-,-,-,-,-,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 72,banteng,Bos_javanicus,unpub.Sch13,-,-,-,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 73,mink,Mustela_vison,S46825,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 74,cat,Felis_catus,Y13698,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,- 75,cat,Felis_catus,AF003087,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 76,dog,Canis_lupus_familiaris,AF042843,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 77,canadian_wolf,Canis_lupus_canadensis,AF113939,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,P,G,Q,G,S,P,G,G,N,R,Y,P 78,dingo,Canis_lupus_hallstromii,AF113937,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,P,G,Q,G,S,P,G,G,N,R,Y,P 79,horse,Equus_familiaris_caballus,unpub.Sch16,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 80,bottle-nosed_dolphin,Tursiops_truncatus,unpub.Sch17,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,G,G,N,R,Y,P 81,camel,Camelus_dromedarius,AF113940,-,-,-,-,-,-,-,-,-,-,-,-,-,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 82,dybowsky_deer,Cervus_nippon_dybowskii,AF113941,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 83,giraffe,Giraffa_camelopardalis_reticulitis,AF113942,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 84,goitered_gazelle,Gazella_subgutturosa,unpub.Sch21,-,-,-,-,-,-,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 85,llama,Lama_glama,AF113943,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,G,N,R,Y,P 87,nyala,Tragelaphus_angasi,unpub.Sch24,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 88,sable_antelope,Hippotragus_niger,unpub.Sch25,-,-,-,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 89,takin,Budorcas_taxicolor,unpub.Sch26,-,-,-,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 91,watussi,Bos_primigenius_taurus,unpub.Sch03,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,G,Q,G,I,P,G,G,N,R,Y,P 92,fallow_deer,Dama_dama,unpub.Cer01,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 93,dusky_titi,Callicebus_moloch,U08312,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 94,siamang,Symphalangus_syndactylus,U08308,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 96,pig-tailed_macaque,Macaca_nemestrina,U08306,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 97,japanese_macaque,Macaca_fuscata,U08301,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 98,diana_monkey,Cercopithecus_dianae,U08292,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 99,rhesus_macaque,Macaca_mulatta,U15163,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 100,elk,Cervus_elaphus_nelsoni,U21210,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 102,pig,Sus_scrofa,L07623,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 103,polecat,Mustela_putorius,U08952,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 104,wisent,Bison_bonasus,unpub.Sch01,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,Q,G,S,P,G,G,N,R,Y,P 105,nubian_ibex,Capra_ibex_nubiana,unpub.Sch02,-,-,-,-,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 106,zebra,Equus_quagga_boehmi,unpub.Sch04,-,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 107,muntjak,Muntiacus_muntjak,AF113944,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 108,muskox,Ovibos_moschatus_moschatus,unpub.Sch06,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 109,black_rat,Rattus_rattus,unpub.Sch07,K,K,R,P,K,P,G,G,-,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 110,arabian_oryx,Oryx_leucoryx,unsub.Poi,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 111,greater_kudu,Tragelaphus_strepsiceros,unsub.Poi,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 112,dog_(greyhound),Canis_lupus_familiaris,AF113938,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,P,G,Q,G,S,P,G,G,N,R,Y,P 113,white-tailed_deer,Odocoileus_virginianus,AF091558_,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 114,white-tailed_deer,Odocoileus_virginianus,AF091559_,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 115,white-tailed_deer,Odocoileus_virginianus,AF091560_,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 116,guinea_pig,Cavia_porcellus,AF139166,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,,,,,,,,,,, 117,bighorn_sheep,Ovis_canadensis,AF166334_,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 118,lemur,Varecia_variegata_variegata,AF177293,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,- 119,cow,Bos_taurus,AJ132392,-,-,-,-,-,-,-,G,G,W,N,T,G,G,S,R,Y,P,G,Q,G,S,P,G,G,N,R,Y,P 120,rabbit,Oryctolagus_cuniculus,AF015603,K,K,R,P,K,P,G,G,G,W,N,T,G,G,S,R,Y,P,G,Q,S,S,P,G,G,N,R,Y,P 900,bushy-tailed_opossum,Trichosurus_vulpecular,L38993_,K,K,P,K,P,R,P,G,G,G,W,N,S,G,G,S,N,R,Y,P,G,Q,P,G,S,P,G,G,N