Prion Repeat Sequence Archive

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Repeat region amino acid alignment: 80 species
Flanking region amino acid sequences
Hairpin C revisited in more species
Repeat sequence DNA from 76 species

Repeat region amino acid alignment: 80 species

10 June 98 webmaster

genus_spp	phylosort	repeat_1	repeat_2	repeat_3	repeat_4	repeat_5	repeat_6
Can.lup.can	acar can	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Can.lup.fam	acar can	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Can.lup.hal	acar can	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Mus.put	acar mus	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Mus.vis	acar mus	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Equ.fam.cab	acar per	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Equ.prz.cab	acar per	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Equ.qua.boe	acar per	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Fel.cat	acat cat	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Sus.scr	art sui sui	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Cam.dro	art tyl cam	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cam.dro	art tyl cam	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Lam.gla	art tyl lam	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ	PHGGG-WGQ
Tur.tru	art xxx dol	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Gaz.sub	bov ant gaz	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ	PHGGGGWGQ
Bis.bon	bov bov bov	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ	PHGGGGWGQ
Bos.pri	bov bov bov	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ	PHGGGGWGQ
Bos.tau	bov bov bov	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ	PHGGGGWGQ
Bos.jav	bov bov bov	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Bos.tau	bov bov bov	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Tra.str	bov bov tra	PQGGGDWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Tra.ang	bov bov tra	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Bud.tax	bov cap bud	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Cap.hir	bov cap cap	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Cap.ibe	bov cap cap	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Cap.hir	bov cap cap	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Ovi.mos	bov cap ovb	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Ovi.ari	bov cap ovi	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Add.nas	bov hip add	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Hip.nig	bov hip hip	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Cer.ela.can	cer cer cer	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Cer.nip.cdyb	cer cer cer	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Cer.ela	cer cer cer	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Mun.mun	cer mun mun	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Odo.hem	cer odo odo	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ		PHGGGGWGQ
Gir.cam.ret	gir gir gir	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ	PHGGGGWGQ
Sai.sci	nwm	PQGGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ	PHGGG-WGQ
Ate.pan	nwm	PQGGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cal.jac	nwm	PQGGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Aot.tri	nwm	PQSGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Ceb.ape	nwm	PQGGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGSWGQ	PHGGG-WGQ
Ate.geo	nwm	PQGGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ
Cer.mon	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cer.neg	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cer.pat	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cer.tor	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Col.gue	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mac.arc	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mac.fas	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mac.fus	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mac.mul	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mac.nem	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Man.sph	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Pap.ham	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Pre.fra	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cal.mol	owm	PQGGGSWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cer.aet	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ
Cer.ate	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ
Cer.dia	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ
Mac.syl	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ
The.gel	owm	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ
Gor.gor	owmga	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Hom.sap	owmga	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Hya.lar	owmga	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Hyl.syn	owmga	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Pan.tro	owmga	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Pon.pyg	owmga	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Sym.syn	owmga	PQGGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Ory.cun	rlag	PQGGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mer.ung	rod	PQGGG-WGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Sig.his	rod	PQGGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cri.gri	rod	PQGGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Cri.mig	rod	PQGGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mes.aur	rod	PQGGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WGQ
Mus.mus.long	rod	PQGG-TWGQ	PHGGGWGQ	PHGGSWGQ	PHGGSWGQ	PHGGG-WGQ
Mus.mus.short	rod	PQGG-TWGQ	PHGGGWGQ	PHGGSWGQ	PHGGSWGQ	PHGGG-WGQ
Rat.rat	rod	PQSGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-GQ	PHGGG-WSQ
Rat.rat	rod	PGSGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WSQ
Rat.nor	rod	PQSGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGG-WSQ
Sig.ful	rod	PQGGGTWGQ	PHGGGWGQ	PHGGGWGQ	PHGGGWGQ	PHGGS-WGQ

Flanking region amino acid sequences

11 June 98 webmaster

species  phylo                  pre repeat         post-repeat         hydrophic
can.lupC car can    .................pgqgspggnryp  gggshsqwgkpnkpktnmkhv  agaaaagavvgglggymlg
can.lupF car can    .................pgqgspggnryp  gggshsqwgkpnkpktnmkhv  agaaaagavvgglggymlg
can.lupH car can    .............................  gggshgqwgkpskpktnmkhv  agaaaagavvgglggymlg
mus.put  car mus    kkrpkpgggwntggsrypgqgspggnryp  gggshgqwgkpskpktnmkhv  agaaaagavvgglggymlg
mus.vis  car mus    kkrpkpgggwntggsrypgqgspggnryp  gggshgqwgkpskpktnmkhv  agaaaagavvgglggymlg
equ.famC car per    kkrpkpgggwntggsrypgqgspggnryp  gg-shgqwnkpskpktnmkhv  agaaaagavvgglggymlg
equ.prz  car per    kkrpkpgggwntggsrypgqgspggnryp  gg-shgqwnkpskpktnmkhv  agaaaagavvgglggymlg
equ.qua  car per    .krpkpgg-wntggsrypgqgspggnryp  gg-shgqwnkpskpktnmkhv  agaaaagavvgglggymlg
fel.cat  cat cat    kkrpkpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
sus.scr  art sui    kkrpkpgggwntggsrypgqgspggnryp  gggshgqwnkpskpktnmkhv  agaaaagavvgglggymlg
cam.dro  art tyl    .............gsrypgqgspggnryp  gggahgqwnkpskpktsmkhv  agaaaagavvgglggymlg
cam.dro  art tyl    kkrpkpgggwntggsrypgqgspggnryp  gggahgqwnkpskpktsmkhv  agaaaagavvgglggymlg
lam.gla  art tyl    ........................gnryp  gggthgqwnkpskpktsmkhv  agaaaagavvgglggymlg
tur.tru  art xxx    .......................ggnryp  gggthnqw-kpskpktnmkhv  agaaaagavvgglggymlg
gaz.sub  bov ant    ......gggwntggsrypgqgspggnryp  gg-thsqwnkpskpktnmkhv  agaaaagavvgglggymlg
bis.bon  bov bov    ...................qgspggnryp  gg-thgqwnkpskpktnmkhv  agaaaagavvgglggymlg
bos.jav  bov bov    ...pkpgggwntggsrypgqgspggnryp  gg-thgqwnkpskpktnmkhv  agaaaagavvgglggymlg
bos.pri  bov bov    ..................gqgipggnryp  gg-thgqwnkpskpktnmkhv  agaaaagavvgglggymlg
bos.tau  bov bov    kkrpkpgggwntggsrypgqgspggnryp  gg-thgqwnkpskpktnmkhv  agaaaagavvgglggymlg
bos.tau  bov bov    kkrpkpgggwntggsrypgqgspggnryp  gg-thsqwnkpskpktnmkhv  agaaaagavvgglggymlg
tra.ang  bov bov    kkrpkpgggwntggsrypgqgspggnryp  gg-thgqwnkpskpktnmkhv  agaaaagavvgglggymlg
tra.str  bov bov    kkrpkpgggwntggsrypgqgspggnryp  gg-thgqwnkpskpktnmkhv  agaaaagavvgglggymlg
bud.tax  bov ca     ...pkpgggwntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhv  agaaaagavvgglggymlg
cap.hir  bov ca     kkrpkpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
cap.hir  bov ca     kkrpkpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
cap.ibe  bov ca     ....kpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
ovi.mos  bov ca     kkrpkpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
ovi.ari  bov ca     kkrpkpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
add.nas  bov hi     ............ggsrypgqgspggnryp  gg-thsqwnkpskpktnmkhv  agaaaagavvgglggymlg
hip.nig  bov hi     ...pkpgggwntggsrypgqgspggnryp  gg-thsqwnkpskpktnmkhv  agaaaagavvgglggymlg
cer.ela  cer cer    kkrpkpgggwntggsrypgqgspggnryp  gg-thsqwnkpskpktnmkhv  agaaaagavvgglggymlg
cer.elc  cer cer    ............ggsrypgqgspggnryp  gg-thsqwnkpskpktnmkhv  agaaaagavvgglggyllg
cer.dyb  cer cer    kkrpkpgggwntggsrypgqgspggnryp  gg-thsqwnkpskpktnmkhv  agaaaagavvgglggymlg
mun.mun  cer mun    kkrpkpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
odo.hem  cer odo    kkrpkpgggwntggsrypgqgspggnryp  gg-shsqwnkpskpktnmkhv  agaaaagavvgglggymlg
gir.cam  gir gir    kkrpkpgggwntggsrypgqgspggnryp  gg-thgqwnkpskpktnmkhm  agaaaagavvgglggymlg
ory.cun  rlag       kkrpkpgggwntggsrypgqsspggnryp  gg-thnqwgkpskpktsmkhv  agaaaagavvgglggymlg
aot.tri  nwm        kkrpkpgg-wntggsrypgqsspggnryp  gggthnqwnkpskpktnmkhm  agaaaagavvgglggymlg
ate.geo  nwm        kkrpkpgg-wntggsrypgqgspggnryp  aggthnqwnkpskpktnmkhm  agaaaagavvgglggymlg
ate.pan  nwm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnmkhm  agaaaagavvgglggymlg
cal.jac  nwm        kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhv  agaaaagavvgglggymlg
sai.sci  nwm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnmkhm  agaaaagavvgglggymlg
ceb.ape  nwm        kkrpkpgg-wntggsrypgqgspggnlyp  gggthnqwnkpskpktsmkhv  agaaaagavvgglggymlg
cer.aet  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
cer.ate  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
cer.dia  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
cer.mon  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
cer.neg  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
cer.pat  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
cer.tor  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
mac.arc  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
mac.fas  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
mac.fus  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
mac.mul  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
mac.nem  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
mac.syl  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
man.sph  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpnkpktsmkhm  agaaaagavvgglggymlg
pap.ham  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
the.gel  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwhkpskpktsmkhm  agaaaagavvgglggymlg
cal.mol  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnmkhv  agaaaagavvgglggymlg
col.gue  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktsmkhm  agaaaagavvgglggymlg
pre.fra  owm        kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpksnmkhm  agaaaagavvgglggymlg
gor.gor  owmga      kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhm  agaaaagavvgglggymlg
hom.sa  owmga       kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhm  agaaaagavvgglggymlg
hya.lar  owmga      kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhm  agaaaagavvgglggymlg
hyl.syn  owmga      kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhm  agaaaagavvgglggymlg
pan.tro  owmga      kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhm  agaaaagavvgglggymlg
pon.pyg  owmga      kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhm  agaaaagavvgglggymlg
sym.syn  owmga      kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhm  agaaaagavvgglggymlg
mer.ung  rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthsqwnkpskpktnmkhv  agaaaagavvgglggymlg
sig.ful  rod        kkrpkpgg-wntggsrypgqgnpggnryp  gggthsqwnkpskpktnmkhv  agaaaagavvgglggymlg
sig.his  rod        kkrpkpgg-wntggsrypgqgnpggnryp  gggthsqwnkpskpktnmkhv  agaaaagavvgglggymlg
cri.gri  rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnmkhv  agaaaagavvgglggymlg
cri.mig  rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnfkhv  agaaaagavvgglggymlg
mes.aur  rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpnkpktsmkhm  agaaaagavvgglggymlg
rat.nor  rod        ......gg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnlkhv  agaaaagavvgglggymlg
rat.rat  rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnlkhv  agaaaagavvgglggymlg
rat.rat  rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnlkhv  agaaaagavvgglggymlg
mus.musS rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnlkhv  agaaaagavvgglggymlg
mus.musL rod        kkrpkpgg-wntggsrypgqgspggnryp  gggthnqwnkpskpktnmkhm  agaaaagavvgglggymlg

Hairpin C revisited

webmaster 12 June 98

addax
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

banteng
aaccgttatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

blrat
aaccgttacccacctcagagtggtggtacctgg
 N  R  Y  P  P  Q  S  G  G  T  W 

camel
aaccgctatccaccccagggagggggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

dog
aaccgctacccaccccagggcggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W

dolphin
aaccgctatccaccccagggagggggaggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

dybowski
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

gerbil
aaccgctaccctcctcagggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  W 

giraffe
aaccgctatccgcctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

gazelle
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

goat
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

horse
aaccgctacccaccccagggcggtggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

lama
aaccgctatccaccccagggagggggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

mtntjak
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

mtskox
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

nubgoat
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

nyala
aaccgctatccatctcagggagggggtggctgg
 N  R  Y  P  S  Q  G  G  G  G  W 

sable
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

sigftlcotrat
aaccgttacccacctcagggtggcggcacctgg
 N  R  Y  P  P  Q  G  G  G  T  W 

sighiscotrat
aaccgttacccacctcagggtggcggcacctgg
 N  R  Y  P  P  Q  G  G  G  T  W 

takin
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

wapiti
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

watusi
aaccgttatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

wisent
aaccgttatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

wolf
aaccgctacccaccccagggcggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

zebra
aaccgctacccaccccagggcggtggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

mink
aaccgctacccaccccagggtggtggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

polecat
aaccgctacccaccccagggtggtggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

pig
aaccgctatccaccccagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

camel2
aaccgctatccaccccagggagggggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

muledeer
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

reddeer
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

kudu
aaccgctatccacctcaagaagggggtgactgg
 N  R  Y  P  P  Q  E  G  G  D  W 

sheep
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

goat
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

cow
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

gorilla
aaccgctacccacctcagggcggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

armhamster
aaccgttacccacctcagggtggtggcacatgg
 N  R  Y  P  P  Q  G  G  G  T  W 

mouseshort
aaccgttacccacctcagggtggcacctggggg
 N  R  Y  P  P  Q  G  G  T  W 

rabbit
aaccgctacccaccccagggcggcggctgg
 N  R  Y  P  P  Q  G  G  G  W 

squmonkey
aaccgctacccaccccagggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  W 

squmonkeyL
aaccgctacccaccccagggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  W  

cebus apella
aacctctacccaccacagggtggtggctgg
 N  L  Y  P  P  Q  G  G  G  W 

ateles paniscus
aaccgctacccaccccagggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  W 

Callithrix jacchus
aaccgctacccaccacagggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  W 

Colobus guereza
aaccgctacccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Papio hamadryas 
aaccgctatccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

Cercopithecus dianae 
aaccgctacccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Cercopithecus aethiops
aaccgctacccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Macaca nemestrina
aaccgctacccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Macaca mulatta
aaccgctacccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Macaca fascicularis
aaccgctacccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Macaca arctoides 
aaccgctacccaccccagggtggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Symphalangus syndactylus
aaccgatacccacctcagggcggtggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Hylobates lar
aaccgatacccacctcagggcggtggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Pongo pygmaeus
aaccgctacccacctcagggcggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Gorilla gorilla
aaccgctacccacctcagggcggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Pan troglodytes
aaccgctacccacctcagggcggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W  

human
aaccgctacccacctcagggcggtggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Cervus elaphus
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Odocoileus hemionus
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Camelus dromedarius1
aaccgctatccaccccagggagggggcggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Capra hircus
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W

African dwarf goat 
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Sus scrofa
aaccgctatccaccccagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Ovis aries
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Bos taurus
aaccgctatccacctcagggagggggtggctgg
 N  R  Y  P  P  Q  G  G  G  G  W 

Tragelaphus streptsiceros
aaccgctatccacctcaagaagggggtgactgg
 N  R  Y  P  P  Q  E  G  G  D  W 

Cricetulus migratorius
aaccgttacccacctcagggtggtggcacatgg
 N  R  Y  P  P  Q  G  G  G  T  W 

Chinese hamster
aaccgttacccacctcagggtggtggcacctgg
 N  R  Y  P  P  Q  G  G  G  T  W

Rattus norvegicus
aaccgttacccacctcagagtggtggtacctgg
 N  R  Y  P  P  Q  S  G  G  T  W 

Oryctolagus cuniculus
aaccgctacccaccccagggcggcggctgg
 N  R  Y  P  P  Q  G  G  G  W

Repeat sequence DNA from 76 species

R1	cctcagggagggggtggctggggtcag	elk_LC=Wapiti_HS	---
R2	ccccatggagg...tggctggggccaa	elk_LC=Wapiti_HS	---
R3	cctcatggagg...tggctggggtcag	elk_LC=Wapiti_HS	---
R4	ccccatggtgg...tggctggggacag	elk_LC=Wapiti_HS	---
R5	ccacatggtggtggaggctggggtcaa	elk_LC=Wapiti_HS	---

R1	cctcagggagggggtggctggggtcag	banteng	644f13
R2	ccccatggagg...tggctggggccag	banteng	644f13
R3	cctcatggagg...tggctggggccag	banteng	644f13
R4	ccccatggagg...tggctggggacag	banteng	644f13
R5	ccacatggtggtggaggctggggtcaa	banteng	644f13

R1	cctcagggagggggtggctggggtcag	watussi	635f31
R2	ccccatggagg...tggctggggccag	watussi	635f31
R32	cctcatggagg...tggctggggccag	watussi	635f31
R3	cctcatggagg...tggctggggtcag	watussi	635f31
R4	ccccatggtgg...tggctggggacag	watussi	635f31
R5	ccacatggtggtggaggctggggtcaa	watussi	635f31

R1	cctcagggagggggtggctggggtcag	wisent	602f31
R2	ccccatggagg...tggctggggccag	wisent	602f31
R32	cctcatggagg...tggctggggccaa	wisent	602f31
R3	cctcatggagg...tggctggggtcag	wisent	602f31
R4	ccccatggtgg...tggctggggacag	wisent	602f31
R5	ccacatggtggtggaggctggggtcaa	wisent	602f31

R1	cctcagggagggggtggctggggtcag	cow	ab001468_795=s556291=x558821
R2	ccccatggagg...tggctggggccag	cow	ab001468_795=s556291=x558821
R32	cctcatggagg...tggctggggccag	cow	ab001468_795=s556291=x558821
R3	cctcatggagg...tggctggggtcag	cow	ab001468_795=s556291=x558821
R4	ccccatggtgg...tggctggggacag	cow	ab001468_795=s556291=x558821
R5	ccacatggtggtggaggctggggtcaa	cow	ab001468_795=s556291=x558821

R1	cctcagggagggggtggctggggtcag	cow	d10614=d905471_771
R2	ccccatggagg...tggctggggccag	cow	d10614=d905471_771
R3	cctcatggagg...tggctggggtcag	cow	d10614=d905471_771
R4	ccccatggtgg...tggctggggacag	cow	d10614=d905471_771
R5	ccacatggtggtggaggctggggtcaa	cow	d10614=d905471_771

R1	ccacagggagggggtggctggggtcag	kudu	x74771_795_tct?
R2	ccccatggagg...tggctggggccag	kudu	x74771_795_tct?
R22	ccccatggagg...cggctggggccag	kudu	x74771_795_tct?
R3	cctcatggagg...tggctggggtcag	kudu	x74771_795_tct?
R4	ccccatggtgg...tggttggggacag	kudu	x74771_795_tct?
R5	ccacatggtggtggaggctggggtcaa	kudu	x74771_795_tct?

R1	ccacagggagggggtggctggggtcag	nyala	681f11_tct?
R2	ccccatggagg...tggctggggtcag	nyala	681f11_tct?
R3	cctcatggagg...tggctggggtcag	nyala	681f11_tct?
R4	ccccatggtgg...tggttggggacag	nyala	681f11_tct?
R5	ccgcatggtggtggaggctggggtcaa	nyala	681f11_tct?

R1	cctcaagaagggggtgactggggtcag	kudu	x74759_771
R2	ccccatggagg...tggctggggccag	kudu	x74759_771
R3	cctcatgtagg...tggctggggtcag	kudu	x74759_771
R4	ccccatggtgg...tggctggggacag	kudu	x74759_771
R5	ccacatggtggtggagggtggggtcaa	kudu	x74759_771

R1	ccacagggagggggtggctggggtcag	kudu	not_submitted_tct?
R2	ccccatggagg...tggctggggccag	kudu	not_submitted_tct?
R3	ccccatggagg...tggttggggtcag	kudu	not_submitted_tct?
R4	ccccatggtgg...tggctggggacag	kudu	not_submitted_tct?
R5	ccgcatggtggtggaggctggggtcaa	kudu	not_submitted_tct?

R1	cctcagggagggggtggctggggtcag	addax	587f31
R2	ccccatggagg...tggctggggccaa	addax	587f31
R3	cctcatggagg...tggctggggtcag	addax	587f31
R4	ccccatggtgg...tggctggggacag	addax	587f31
R5	ccacatggtggtggaggctggggtcaa	addax	587f31

R1	ccccagggagggggaggctggggtcag	dolphin	426f23
R2	ccccacggtgg...tggctggggacag	dolphin	426f23
R3	ccccacggtgg...tggctggggtcag	dolphin	426f23
R4	ccccacggtgg...tggctggggacag	dolphin	426f23
R5	ccccatggtggtggaggctggggtcaa	dolphin	426f23

R1	cctcagggagggggtggctggggtcag	dybowski	559f33
R2	ccccatggagg...tggctggggccaa	dybowski	559f33
R3	cctcatggagg...tggctggggtcag	dybowski	559f33
R4	ccccatggtgg...tggctggggacag	dybowski	559f33
R5	ccacatggtggtggaggctggggtcaa	dybowski	559f33

R1	cctcagggagggggtggctggggtcag	gazelle	680f22
R2	ccccatggagg...tggctggggccaa	gazelle	680f22
R3	cctcatggagg...tggctggggtcag	gazelle	680f22
R43	ccccatggagg...tggctggggtcag	gazelle	680f22
R4	ccccatggtgg...tggctggggacag	gazelle	680f22
R5	ccacatggtggtggaggctggggtcaa	gazelle	680f22

R1	cctcagggagggggtggctggggtcag	goat	768f11
R2	ccccatggagg...tggctggggccaa	goat	768f11
R3	cctcatggagg...tggctggggtcag	goat	768f11
R4	ccccatggtgg...tggctggggacag	goat	768f11
R5	ccacatggtggtggaggctggggtcaa	goat	768f11

R1	cctcagggagggggtggctggggtcag	muntjak	315f11
R2	ccccatggagg...tggctggggccaa	muntjak	315f11
R3	cctcatggagg...tggctggggtcag	muntjak	315f11
R4	ccccatggtgg...tggctggggacag	muntjak	315f11
R5	ccacatggtggtggaggctggggtcaa	muntjak	315f11

R1	cctcagggagggggtggctggggtcag	muskox	768f11
R2	ccccatggagg...tggctggggccaa	muskox	768f11
R3	cctcatggagg...tggctggggtcag	muskox	768f11
R4	ccccatggtgg...tggctggggacag	muskox	768f11
R5	ccacatggtggtggaggctggggtcaa	muskox	768f11

R1	cctcagggagggggtggctggggtcag	nubian_goat	605f13
R2	ccccatggagg...tggctggggccaa	nubian_goat	605f13
R3	cctcatggagg...tggctggggtcag	nubian_goat	605f13
R4	ccccatggtgg...tggctggggacag	nubian_goat	605f13
R5	ccacatggtggtggaggctggggtcaa	nubian_goat	605f13

R1	cctcagggagggggtggctggggtcag	sable	670f12
R2	ccccatggagg...tggctggggacag	sable	670f12
R3	ccacatggagg...tggctggggtcag	sable	670f12
R4	ccccatggtgg...tggctggggacag	sable	670f12
R5	ccacatggtggtggaggctggggccaa	sable	670f12

R1	cctcagggagggggtggctggggtcag	takin	586f12
R2	ccccatggaggtggc...tggggccaa	takin	586f12
R3	cctcatggaggtggc...tggggtcag	takin	586f12
R4	ccccatggtggtggc...tggggacag	takin	586f12
R5	ccacatggtggtggaggctggggtcaa	takin	586f12

R1	ccccagggagggggcggctggggtcag	camel	629f31
R2	ccccacggaggaggc...tggggtcag	camel	629f31
R3	ccccacggaggcggc...tggggtcag	camel	629f31
R4	ccccacggaggcggc...tggggccag	camel	629f31
R5	ccccatggtgg...aggctggggtcaa	camel	629f31

R1	ccccagggagggggcggctggggtcag	camel	y09760
R2	ccccacggaggaggc...tggggtcag	camel	y09760
R3	ccccacggaggcggc...tggggtcaa	camel	y09760
R4	ccccacggaggcggc...tggggccag	camel	y09760
R5	ccccatggtgg...aggctggggtcaa	camel	y09760

R1	ccccagggagggggcggctggggtcag	lama	608f31
R2	ccccacggaggaggc...tggggtcag	lama	608f31
R3	ccccacggaggcggc...tggggtcag	lama	608f31
R34	ccccacggaggaggc...tggggtcag	lama	608f31
R4	ccccacggaggcggc...tggggccag	lama	608f31
R5	ccccatggtgg...aggctggggtcaa	lama	608f31

R1	cctcagggagggggtggctggggtcag	giraffe	---
R2	ccccatggtggtgg...ctggggtcag	giraffe	---
R3	ccccatggaggtgg...ctggggccaa	giraffe	---
R34	cctcatggaggtgg...ctggggtcag	giraffe	---
R4	ccccatggtggtgg...ttggggacag	giraffe	---
R5	ccacatggtggtggaggctggggtcaa	giraffe	---

R1	cctcagggagggggtggctggggtcag	muledeer	---
R2	ccccatggaggtgg...ctggggccaa	muledeer	---
R3	cctcatggaggtgg...ctggggtcag	muledeer	---
R4	ccccatggtggtgg...ctgggggcag	muledeer	---
R5	ccacatggtggtggaggctggggtcaa	muledeer	---

R1	cctcagggagggggtggctggggtcag	reddeer	---
R2	ccccatggaggtgg...ctggggccaa	reddeer	---
R3	cctcatggaggtgg...ctggggtcag	reddeer	---
R4	ccccatggtggtgg...ctggggacag	reddeer	---
R5	ccacatggtggtggaggctggggtcaa	reddeer	---

R1	ccccagggagggggtggctggggacag	pig	---
R2	ccccacggaggtgg...ctggggacag	pig	---
R3	ccccacggaggcgg...ctggggacag	pig	---
R4	ccccacggtggggc...ctggggacag	pig	---
R5	ccccatggtggcggaggctggggtcaa	pig	---

R1	cctcagggagggggtggctggggtcag	sheep	---
R2	ccccatggaggtgg...ctggggccaa	sheep	---
R3	cctcatggaggtgg...ctggggtcag	sheep	---
R4	ccccatggtggtgg...ctggggacag	sheep	---
R5	ccacatggtggtggaggctggggtcaa	sheep	---

R1	cctcagggagggggtggctggggtcag	oryx	---
R2	ccccatgga...ggtggctggggccaa	oryx	---
R3	cctcatgga...ggtggctggggtcag	oryx	---
R4	ccccatggt...ggtggctggggacag	oryx	---
R5	ccacatggtggtggaggctggggtcaa	oryx	---

R1	cctcagggagggggtggctggggtcag	dwarf_goat	---
R2	ccccatgga...ggtggctggggccaa	dwarf_goat	---
R3	cctcatgga...ggtggctggggtcag	dwarf_goat	---
R4	ccccatggt...ggtggctggggacag	dwarf_goat	---
R5	ccacatggtggtggaggctggggtcaa	dwarf_goat	---

R1	ccccagggcggtggtggctggggtcag	dingo	---
R2	ccccatggtgg...cggctggggtcag	dingo	---
R3	ccccatggtgg...cggctggggtcag	dingo	---
R4	ccccacggtgg...tggctggggacag	dingo	---
R5	ccacatggtggtggtggttggggtcaa	dingo	---

R1	ccccagggcggtggtggctggggtcag	dog	644f31
R2	ccccatggtgg...tggctggggtcag	dog	644f31
R3	cctcatggtgg...cggctggggtcag	dog	644f31
R4	ccccacggtgg...tggctggggacag	dog	644f31
R5	ccacatggtggtggtggttggggtcaa	dog	644f31

R1	ccccagggcggtggtggctggggtcag	wolf	586f12
R2	ccccatggtgg...tggctggggtcag	wolf	586f12
R3	cctcatggtgg...cggctggggtcag	wolf	586f12
R4	ccccacggtgg...tggctggggacag	wolf	586f12
R5	ccacatggtggtggtggttggggtcaa	wolf	586f12

R1	ccccagggtggtggcggctggggccag	Mus_putorius_	U08952
R2	ccccacggggg...tggctggggacag	Mus_putorius_	U08952
R3	ccccacggggg...tggctggggacag	Mus_putorius_	U08952
R4	ccccacggggg...tggctggggacag	Mus_putorius_	U08952
R5	ccgcatggtggcggtggctggggtcaa	Mus_putorius_	U08952

R1	ccccagggtggtggcggctggggccag	Mus_put_	S46825
R2	ccccacggggg...tggctggggacag	Mus_put_	S46825
R3	ccccacggggg...tggctggggtcag	Mus_put_	S46825
R4	ccccacggggg...tggctggggacag	Mus_put_	S46825
R5	ccgcatggtggcggtggctggggtcaa	Mus_put_	S46825

R1	ccccagggcggtggcggctggggtcaa	horse	681f11
R2	ccccatggtgg...tggttggggtcag	horse	681f11
R3	ccccatggtgg...tggctggggtcag	horse	681f11
R4	ccgcatggtgg...tggttggggacag	horse	681f11
R5	ccccatggtggtggaggctggggtcaa	horse	681f11

R1	ccccagggcggtggcggctggggtcaa	zebra	666f11
R2	ccccatggtgg...tggttggggtcag	zebra	666f11
R3	ccccatggtgg...tggctggggtcag	zebra	666f11
R4	ccgcacggtgg...tggttggggacag	zebra	666f11
R5	ccccatggtggtggaggctggggtcaa	zebra	666f11

R1	cctcagggcggtggtggctgggggcag	human	m81930
R2	cctcatggtggtgg...ctgggggcag	human	m81930
R3	cctcatggtggtgg...ctgggggcag	human	m81930
R4	ccccatggtggtgg...ctggggacag	human	m81930
R5	cctcatggtggtgg...ctggggtcaa	human	m81930

R1	cctcagggcggtggtggctgggggcag	gorilla	u08300=u15166
R2	cctcatggtggtgg...ctgggggcag	gorilla	u08300=u15166
R3	cctcatggtggtgg...ctgggggcag	gorilla	u08300=u15166
R4	ccccatggtggtgg...ctggggacag	gorilla	u08300=u15166
R5	cctcatggtggtgg...ctggggtcaa	gorilla	u08300=u15166

R1	cctcagggcggtggtggctgggggcag	pantroglodytes	u08296=u15039
R2	cctcatggtggtgg...ctgggggcag	pantroglodytes	u08296=u15039
R3	cctcatggtggtgg...ctgggggcag	pantroglodytes	u08296=u15039
R4	ccccatggtggtgg...ctggggacag	pantroglodytes	u08296=u15039
R5	cctcatggtggtgg...ctggggtcaa	pantroglodytes	u08296=u15039

R1	cctcagggcggtggtggctgggggcag	pongopygmaeus	u08305
R2	cctcatggtggtgg...ctgggggcag	pongopygmaeus	u08305
R3	cctcatggtggtgg...ctgggggcag	pongopygmaeus	u08305
R4	ccccatggtggtgg...ctgggggcag	pongopygmaeus	u08305
R5	cctcatggtggtgg...ctggggtcaa	pongopygmaeus	u08305

R1	cctcagggcggtggcggctgggggcag	hylobateslar	u08299
R2	cctcatggtggtgg...ctgggggcag	hylobateslar	u08299
R3	cctcatggtggtgg...ctgggggcag	hylobateslar	u08299
R4	ccccatggtggtgg...ctggggacag	hylobateslar	u08299
R5	cctcatggcggtgg...ctggggtcaa	hylobateslar	u08299

R1	ccccagggtggtggtggctgggggcag	colobusguereza	u753892
R2	cctcatggtggtgg...ctggggtcag	colobusguereza	u753892
R3	cctcatggtggcgg...ctggggacag	colobusguereza	u753892
R4	cctcatggtggtgg...ctggggacag	colobusguereza	u753892
R5	cctcatggtggtgg...ctggggtcaa	colobusguereza	u753892

R1	ccccagggtggtggtggctgggggcag	presbytisfran	u083022
R2	cctcatggtggtgg...ctgggggcag	presbytisfran	u083022
R3	cctcatggtggcgg...ctggggacag	presbytisfran	u083022
R4	cctcatggtggcgg...ctggggacag	presbytisfran	u083022
R5	cctcatggtggtgg...ctggggtcaa	presbytisfran	u083022

R1	ccccagggtggtggtggctgggggcag	colobusguereza	u082972
R2	cctcatggtggtgg...ctgggggcaa	colobusguereza	u082972
R3	cctcatggtggtgg...ctggggacag	colobusguereza	u082972
R4	cctcatggtggcgg...ctggggacag	colobusguereza	u082972
R5	cctcatggtggtgg...ctggggtcaa	colobusguereza	u082972

R1	ccccagggtggtggtggctgggggcag	papiohamadryas	u08294
R2	cctcatggtggtgg...ctgggggcaa	papiohamadryas	u08294
R3	ccccatggtggcgg...ctggggacag	papiohamadryas	u08294
R4	cctcatggtggcgg...ctggggacag	papiohamadryas	u08294
R5	cctcatggtggtgg...ctggggtcaa	papiohamadryas	u08294

R1	ccccagggtggtggtggctgggggcag	macarct	u083owm
R2	cctcatggtggtgg...ctgggggcaa	macarct	u083owm
R3	ccccatggtggcgg...ctggggacag	macarct	u083owm
R4	cctcatggtggcgg...ctggggacag	macarct	u083owm
R5	cctcatggtggtgg...ctggggtcaa	macarct	u083owm

R1	ccccagggtggtggtggctgggggcag	macsylvanus	u75382a
R2	cctcatggtggtgg...ctgggggcaa	macsylvanus	u75382a
R3	ccccatggtggtgg...ctggggacag	macsylvanus	u75382a
R5	cctcatggtggtgg...ctggggtcaa	macsylvanus	u75382a

R1	ccccagggtggtggtggctgggggcag	mandsphinx	u08303
R2	cctcatggtggtgg...ctgggggcaa	mandsphinx	u08303
R3	ccccatggtggcgg...ctggggacag	mandsphinx	u08303
R4	cctcatggtggcgg...ctggggacag	mandsphinx	u08303
R5	cctcatggtggtgg...ctggggtcaa	mandsphinx	u08303

R1	ccccagggtggtggtggctgggggcag	cercopneg	u75387
R2	cctcatggtggtgg...ctgggggcaa	cercopneg	u75387
R3	ccccatggtggcgg...ctggggacag	cercopneg	u75387
R4	cctcatggtggcgg...ctggggacag	cercopneg	u75387
R5	cctcatggtggtgg...ctggggtcaa	cercopneg	u75387

R1	ccccagggtggtggtggctgggggcag	cercopmona	u75386
R2	cctcatggtggtgg...ctgggggcaa	cercopmona	u75386
R3	ccccatggtggtgg...ctggggacag	cercopmona	u75386
R4	cctcatggtggcgg...ctggggacag	cercopmona	u75386
R5	cctcatggtggtgg...ctggggtcaa	cercopmona	u75386

R1	ccccagggtggcggtggctgggggcag	cercoctorq	u75385
R2	cctcatggtggtgg...ctgggggcaa	cercoctorq	u75385
R3	ccccatggtggcgg...ctggggacag	cercoctorq	u75385
R4	cctcatggtggcgg...ctggggacag	cercoctorq	u75385
R5	cctcatggtggtgg...ctggggtcaa	cercoctorq	u75385

R1	ccccagggtggtggtggctgggggcag	cercoppatas	u75388
R2	cctcatggtggtgg...ctgggggcaa	cercoppatas	u75388
R3	ccccatggtggcgg...ctggggacag	cercoppatas	u75388
R4	cctcatggtggcgg...ctggggacag	cercoppatas	u75388
R5	cctcatggtggtgg...ctggggtcag	cercoppatas	u75388

R1	ccccagggtggtggtggctgggggcag	cercopaeth	u08291
R2	cctcatggtggtgg...ctgggggcaa	cercopaeth	u08291
R3	ccccatggtggcgg...ctggggacag	cercopaeth	u08291
R5	cctcatggtggtgg...ctggggtcaa	cercopaeth	u08291

R1	ccccagggtggtggtggctgggggcag	cercocater	u75384
R2	cctcatggtggtgg...ctgggggcaa	cercocater	u75384
R3	ccccatggtggcgg...ctggggacag	cercocater	u75384
R5	cctcatggtggtgg...ctggggtcaa	cercocater	u75384

R1	ccccagggtggtggtggctgggggcag	therogel	u75383
R2	cctcatggtggtgg...ctgggggcag	therogel	u75383
R3	ccccatggtggcgg...ctggggacag	therogel	u75383
R5	cctcatggtggtgg...ctggggtcaa	therogel	u75383

R1	ccacagggtggtgg...ctgggggcag	cebusapella	u08295
R2	cctcatggtggtgg...ctgggggcaa	cebusapella	u08295
R3	ccccatggtggcgg...ctggggacag	cebusapella	u08295
R4	ccccatggtggcag...ctggggacag	cebusapella	u08295
R5	cctcatggtggtgg...ctggggtcaa	cebusapella	u08295

R1	ccccagggtggtgg...ctgggggcaa	atelesgeo	u08309
R3	ccccatggtggcgg...ctgggggcag	atelesgeo	u08309
R3	ccccatggtggcgg...ctggggacag	atelesgeo	u08309
R5	cctcatggtggtgg...ctggggtcaa	atelesgeo	u08309

R1	ccccagagcggtgg...ctgggggcag	aotustrivir	u08293?
R2	cctcatggtggtgg...ctgggggcaa	aotustrivir	u08293?
R3	ccccatggtggcgg...ctggggacag	aotustrivir	u08293?
R4	ccccatggcggtgg...ctggggacag	aotustrivir	u08293?
R5	cctcatggtggtgg...ctggggtcaa	aotustrivir	u08293?

R1	ccccagggtggtggtagctgggggcag	callimoloch	u08312
R2	cctcatggtggcgg...ctgggggcag	callimoloch	u08312
R3	ccccatggtggtgg...ctgggggcag	callimoloch	u08312
R4	ccccatggtggtgg...ctggggacag	callimoloch	u08312
R5	cctcatggtggtgg...ctggggtcaa	callimoloch	u08312

R1	ccccagggtggtgg...ctgggggcag	saimirisci	u08310
R2	cctcatggtggtgg...ctgggggcaa	saimirisci	u08310
R3	ccccatggtggcgg...ctggggacag	saimirisci	u08310
R4	ccccatggtggcgg...ctggggacag	saimirisci	u08310
R4	ccccatggtggtgg...ctggggacag	saimirisci	u08310
R5	cctcatggtggcgg...ctggggtcaa	saimirisci	u08310

R1	ccccagggtggtgg...ctgggggcag	saimirisci	u15165
R2	cctcatggtggtgg...ctgggggcaa	saimirisci	u15165
R3	ccccatggtggcgg...ctggggacag	saimirisci	u15165
R4	ccccatggtggcgg...atggggacag	saimirisci	u15165
R5	cctcatggtggcgg...ctggggtcaa	saimirisci	u15165

R1	ccacagggtggtgg...ctgggggcag	caljacchus	u08304
R2	cctcatggtggtgg...ctgggggcaa	caljacchus	u08304
R3	cctcatggtggcgg...ctggggacag	caljacchus	u08304
R4	ccccatggtggcgg...ctggggacag	caljacchus	u08304
R5	cctcatggtggtgg...ctggggtcaa	caljacchus	u08304

R1	ccccagggcggcgg...ctggggacag	oryctcun	u28334
R2	ccccatggcggcgg...ctgggggcag	oryctcun	u28334
R3	cctcacggtggtgg...ctggggacag	oryctcun	u28334
R4	ccccacggcggtgg...ctgggggcag	oryctcun	u28334
R5	ccccacggtggtgg...ctggggtcaa	oryctcun	u28334

R1	cctcagggtggcggcacatgggggcaa	goldenham	k02234
R2	ccccatggtggtgg...ctggggacag	goldenham	k02234
R3	ccccatggtggtgg...ctggggacag	goldenham	k02234
R4	ccccatggtggtgg...ctggggtcag	goldenham	k02234
R5	ccccatggtggtgg...ctggggtcaa	goldenham	k02234

R1	cctcagggtggtggcacatgggggcaa	armenianham	m33959
R2	ccccatggtggtgg...ctggggacag	armenianham	m33959
R3	ccccatggtggtgg...ctggggacaa	armenianham	m33959
R4	cctcatggtggtgg...ttggggtcag	armenianham	m33959
R5	ccccatggtggtgg...ctggggtcaa	armenianham	m33959

R1	cctcagggtggtggcacctgggggcaa	chineseham	m33958
R2	ccccatggtggtgg...atggggacag	chineseham	m33958
R3	ccccatggtggtgg...ctggggacaa	chineseham	m33958
R4	cctcatggtggtgg...ttggggtcag	chineseham	m33958
R5	ccccatggtggtgg...ctggggtcaa	chineseham	m33958

R1	cctcagggtggcac...ctgggggcag	mouseshort	m18070
R2	ccccacggtggtgg...ctggggacaa	mouseshort	m18070
R3	ccccatgggggcag...ctggggacaa	mouseshort	m18070
R4	cctcatggtggtag...ttggggtcag	mouseshort	m18070
R5	ccccatggcggtgg...atggggccaa	mouseshort	m18070

R1	cctcagggtggcac...ctgggggcag	mouselong	m18071
R2	ccccacggtggtgg...ctggggacaa	mouselong	m18071
R3	ccccatgggggcag...ctggggacaa	mouselong	m18071
R4	cctcatggtggtag...ttggggtcag	mouselong	m18071
R5	ccccatggcggtgg...atggggccaa	mouselong	m18071

R1	cctcagagtggtggtacctgggggcag	rat	d50093
R2	ccccatggtggtgg...ctggggacaa	rat	d50093
R3	cctcatggtggtgg...ctggggacaa	rat	d50093
R4	cctcatggtggtgg...ctggggtcag	rat	d50093
R5	ccccatggcggggg...ctggagtcaa	rat	d50093

R1	cctcagagtggtggtacctgggggcag	rat	m20313
R2	ccccatggtggtgg...ctggggacaa	rat	m20313
R3	cctcatggtggtgg...ctggggacaa	rat	m20313
R4	cctcatggtggtgg...ctggggtcag	rat	m20313
R5	ccccatggcggggg...ctggagtcaa	rat	m20313

R1	cctcagagtggtggtacctgggggcag	zitterrat	s69654
R2	ccccatggtggtgg...ctggggacaa	zitterrat	s69654
R3	cctcatggtggtgg...ctggggacaa	zitterrat	s69654
R4	cctcatggtggtgg...ctggggtcag	zitterrat	s69654
R5	ccccatggcggggg...ctggagtcaa	zitterrat	s69654

R1	cctcagagtggtggtacctgggggcag	blrat	762f11
R2	ccccatggtggtgg...ctggggacaa	blrat	762f11
R3	cctcatggtggtgg...ctggggacaa	blrat	762f11
R4	cctcatggtggtgg...ctggggtcag	blrat	762f11
R5	ccccatggcggggg...ctggagtcaa	blrat	762f11

R1	cctcctcagggtggtggctgggggcag	gerbil	759f11
R2	ccccatggtggtgg...ctgggggcag	gerbil	759f11
R3	ccccatggtggggg...ctggggacag	gerbil	759f11
R4	cctcatggcggggg...ctggggtcag	gerbil	759f11
R5	cctcatggcggtgg...ctggggtcaa	gerbil	759f11

R1	cctcagggtggcggcacctgggggcag	sighiscotrat	762f11
R2	ccccatggtggtgg...ctgggggcag	sighiscotrat	762f11
R3	cctcatggtggtgg...ctgggggcag	sighiscotrat	762f11
R4	ccccatggtggtgg...ttggggtcag	sighiscotrat	762f11
R5	ccccatggtggtgg...ctggggtcaa	sighiscotrat	762f11

R1	cctcagggtggcggcacctgggggcag	sigfulcotrat	762f11
R2	ccccatggtggtgg...ctgggggcag	sigfulcotrat	762f11
R3	cctcatggtggtgg...ctgggggcag	sigfulcotrat	762f11
R4	ccccatggtggtgg...ttgggggcag	sigfulcotrat	762f11
R5	ccccatggtggtag...ctggggtcaa	sigfulcotrat	762f11

R1	cct.........ggc......tgggggcac	Trichovul	L38993
R2	cctcagggaggtggcaccaattggggtcag	Trichovul	L38993
R3	ccccatcccgggggttccaattggggtcag	Trichovul	L38993
R4	ccccatcctgggggttccagttggggtcag	Trichovul	L38993
R5	ccacat...ggtggatctaactggggtcag	Trichovul	L38993

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